PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004508803.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 206aa MW: 22744.6 Da PI: 8.9127

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004508803.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.9	2.7e-06	110	136	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i ++ L++l+P + XP_004508803.1 110 SHSLAERARREKISVRMKILQDLVPGC 136 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.45E-5	104	145	No hit	No description
SuperFamily	SSF47459	1.2E-7	104	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.248	106	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-7	109	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MEAPLVNDST FSSTNPSLSE IWPFPLHHSY YNSHFSPQQY NNNNNNECGS GTTKHIKLGS 60 SVSDDKKATS IAAQQEEKQN AKPSCDVAVP VPPKQDYIHV RARRGQATDS HSLAERARRE 120 KISVRMKILQ DLVPGCNKFL SMKLEALNSR FNMHPAIDCF PSKEVGAQPF DLSGIIFGPQ 180 AGRGYAQGSQ PGWLHMQIAG GFNKSM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT099333	3e-39	BT099333.1 Soybean clone JCVI-FLGm-16N18 unknown mRNA.
GenBank	KT031124	3e-39	KT031124.1 Glycine max clone HN_CCL_216 bHLH transcription factor (Glyma17g10290.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004508803.1	1e-156	PREDICTED: transcription factor bHLH79 isoform X2
Swissprot	Q9LV17	1e-37	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A0B2QES4	9e-87	A0A0B2QES4_GLYSO; Transcription factor bHLH79
TrEMBL	I1MTN2	9e-87	I1MTN2_SOYBN; BHLH transcription factor
STRING	GLYMA17G10290.1	2e-86	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	4e-48	BIG PETAL P